Phase 003: remove the coding-agent and ekko-agent runtimes
Every chat session now runs through the Hermes bridge, so the three chat chains become feature-equivalent instead of three partially-maintained dispatch paths. Keeping the coding-agent and in-house agent runtimes alive meant every bridge change had to be mirrored into two more runtimes that had already drifted. Historical rows are read, not migrated: sessions stored with the retired source normalize to cli on load, workflow graphs naming the retired agents keep loading and run on the bridge, and the visible-source check plus SOURCE_LABELS still recognize the old value so those sessions stay listed. The public surface follows the code: the OpenAPI generator and the MCP chat-run tool schema drop the six retired entry fields so external callers are not told about runtimes that no longer exist. harness-check gains a RETIRED_RUNTIME scan so the residual check is a mechanical gate instead of a manual grep, with the two surviving read-side compat sites recorded with reasons. Refs: docs/phases/phase_003.md
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@@ -273,7 +273,7 @@ describe('Usage Store (SQLite path)', () => {
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{ model: 'gpt-test', input_tokens: 100, output_tokens: 40, cache_read_tokens: 30, cache_write_tokens: 5, reasoning_tokens: 8, sessions: 2 },
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])
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.mockReturnValueOnce([
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{ agent: 'coding_agent', input_tokens: 100, output_tokens: 40, cache_read_tokens: 30, cache_write_tokens: 5, reasoning_tokens: 8, sessions: 2 },
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{ agent: 'global_agent', input_tokens: 100, output_tokens: 40, cache_read_tokens: 30, cache_write_tokens: 5, reasoning_tokens: 8, sessions: 2 },
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])
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.mockReturnValueOnce([
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{ date: '2026-07-11', input_tokens: 100, output_tokens: 40, cache_read_tokens: 30, cache_write_tokens: 5, sessions: 2 },
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@@ -295,7 +295,7 @@ describe('Usage Store (SQLite path)', () => {
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{ model: 'gpt-test', input_tokens: 100, output_tokens: 40, cache_read_tokens: 30, cache_write_tokens: 5, reasoning_tokens: 8, sessions: 2 },
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],
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by_agent: [
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{ agent: 'coding_agent', input_tokens: 100, output_tokens: 40, cache_read_tokens: 30, cache_write_tokens: 5, reasoning_tokens: 8, sessions: 2 },
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{ agent: 'global_agent', input_tokens: 100, output_tokens: 40, cache_read_tokens: 30, cache_write_tokens: 5, reasoning_tokens: 8, sessions: 2 },
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],
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by_day: [
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{ date: '2026-07-11', input_tokens: 100, output_tokens: 40, cache_read_tokens: 30, cache_write_tokens: 5, sessions: 2, errors: 0, cost: 0 },
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